Revista Chapingo Serie Ciencias Forestales y del Ambiente
Molecular characterization using ISSR primers of Magnolia mexicana DC. from two regions in Zongolica, Veracruz, Mexico
ISSNe: 2007-4018   |   ISSN: 2007-3828
PDF
ePUB

Keywords

Threatened species
fragmented habitat
genetic variability
Shannon-Weaver index

How to Cite

Medrano-Hernández, J. M. ., Rodríguez de la O, J. L., Reyes-Trejo, B., & Peña-Ortega, M. G. (2017). Molecular characterization using ISSR primers of Magnolia mexicana DC. from two regions in Zongolica, Veracruz, Mexico. Revista Chapingo Serie Ciencias Forestales Y Del Ambiente, 23(3), 427–436. https://doi.org/10.5154/r.rchscfa.2017.03.019

##article.highlights##

  • Analysis of molecular variance showed that 90.8 % of the variability is within each population.
  • The study suggests that the M. mexicana populations have not undergone changes in their genetic structure.
  • There is no evidence of alterations caused by population reduction or habitat fragmentation.
  • The populations of Magnolia mexicana are from Amatitla and Zapotla in Zongolica, Veracruz.

Abstract

Introduction: Magnolia mexicana DC. is a threatened species according to NOM-059-SEMARNAT-2010, a situation attributed to the fragmentation and destruction of its habitat. There are no studies on the genetic diversity of M. mexicana, even though it is endemic to our country.
Objective: To evaluate genetic variability in two M. mexicana populations using ISSR molecular markers.
Materials and methods: The collections come from Amatitla and Zapotla in Zongolica, Veracruz. The DNA was extracted from the young leaves. A total of 55 ISSR primers were tested; the 10 that produced the highest number of polymorphic bands were selected and amplified by PCR.
Results and discussion: The ISSR primers showed 86 % polymorphism. Cluster analysis, using Ward's minimum variance method, was able to separate the collections by their geographical origin. Analysis of molecular variance showed that the greatest variability (90.88 %) is found within each population. The Shannon-Weaver diversity index was 0.47 and 0.41 for Amatitla and Zapotla, respectively.
Conclusion: The M. mexicana populations have not undergone changes in their genetic structure; there is no evidence at genetic level of alterations caused by population reduction or habitat fragmentation.

https://doi.org/10.5154/r.rchscfa.2017.03.019
PDF
ePUB

References

Aga, E., Bekele, E., & Bryngelsson, T. (2005). Inter-simple sequence repeat (ISSR) variation in coffee forest trees (Coffea arabica L.) populations from Ethiopia. Genetica, 124, 213-221. doi: https://doi.org/10.1007/s10709-005-1484-6

Ahmed, S., Compton, S. G., Butlin, R. K., & Gilmartin, P. M. (2009). Wind-borne insects mediate directional pollen transfer between desert fig trees. 160 kilometers apart. Proceedings of the National Academy of Sciences, 106(48), 20342-20347. doi: https://doi.org/10.1073/pnas.0902213106

Balzarini, M., & Di Rienzo, J. (2004). Info-Gen: Software para análisis estadístico de datos genéticos. Argentina: Facultad de Ciencia Agropecuarias, Universidad Nacional de Córdoba.

Balzarini, M., Bruno, C., Peña, A., Teich, I., & Di Rienzo, J. (2010). Estadística en Biotecnología. Aplicaciones en Info-Gen. Córdoba, Argentina: Encuentro Grupo Editor.

Céspedes, M., Gutiérrez, M. V., Holbrook, N. M., & Rocha, J. (2003). Restoration of genetic diversity in the dry forest tree Swietenia macrophylla (Meliaceae) after pasture abandonment in Costa Rica. Molecular Ecology, 12(12), 3201-3212.

Chen, L., Chen, F., He, S., & Ma, L. (2014). High genetic diversity and small genetic variation among populations of Magnolia wufengensis (Magnoliaceae), revealed by ISSR and SRAP markers. Electronic Journal of Biotechnology. Retrieved from http://www.redalyc.org/articulo.oa?id=173332565003

Cicuzza, D., Newton, A., & Oldfield, S. (2007). Red list of the Magnoliaceae. Cambridge, UK: Fauna & Flora International. Retrieved from https://www.bgci.org/plant-conservation/magnolia_red_list/

Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO). (2010). El bosque mesófilo de montaña en México: amenazas y oportunidades para su conservación y manejo sostenible. México: Autor.

Cornejo, R. A., Serrato, D. A., Rendón, A., & Rocha, M. M. G. (2014). Herramientas moleculares aplicadas en ecología: aspectos teóricos y prácticos. México: INECC/SEMARNAT. Retrieved from http://www.publicaciones.inecc.gob.mx/?id_pub=710

Dellaporta, S. L., Wood, J., & Hicks, J. B. (1983). A plant DNA minipreparation: Version II. Plant Molecular Biology Reporter, 1(4), 19-21. doi: https://doi.org/10.1007/BF02712670

Endress, P. K., & Doyle, J. A. (2009). Reconstructing the ancestral angiosperm flower and its initial specializations. American Journal of Botany, 96(1), 22-66. doi: https://doi.org/10.3732/ajb.0800047

Figueroa-Esquivel, E. M., Puebla-Olivares, F., Eguiarte, L. E., & Núñez-Farfán, J. (2010). Genetic structure of a bird-dispersed tropical tree (Dendropanax arboreus) in a fragmented landscape in Mexico. Revista Mexicana de Biodiversidad, 81(3), 789-800 Retrieved from http://www.redalyc.org/articulo.oa?id=42518439019

Giustina, L. D., Luz, L. N., Vieira, F. S., Rossi, F. S., Soares-Lopes, C. R. A., Pereira, T. N. S., & Rossi, A. A. B. (2014). Population structure and genetic diversity in natural populations of Theobroma speciosum Willd. Ex Spreng (Malvaceae). Genetics and Molecular Research: GMR, 13(2), 3510-3519. doi: https://doi.org/10.4238/2014.February.14.5

Godwin, I. D., Aitken, E. A. B., & Smith, L. W. (1997). Application of inter simple sequence repeat (ISSR) markers to plant genetics. Electrophoresis, 18(9), 1524-1528. doi: https://doi.org/10.1002/elps.1150180906

Hamrick, J. L., Godt, M. J. W., & Sherman-Broyles, S. L. (1992). Factors influencing levels of genetic diversity in woody plant species. New Forests, 6(1-4), 95-124. doi: https://doi.org/10.1007/BF00120641

Hardy, O. J., González-Martínez, S. C., Colas, B., Fréville, H., Mignot, A., & Olivieri, I. (2004). Fine-scale genetic structure and gene dispersal in Centaurea corymbosa (Asteraceae). II. Correlated paternity within and among sibships. Genetics, 168(3), 1601-1614. doi: https://doi.org/10.1534/genetics.104.027714

Mohammadi, S. A., & Prasanna, B. M. (2003). Analysis of genetic diversity in crop plants-salient statistical tools and considerations. Crop Science, 43, 235-248. Retrieved from https://www.researchgate.net/publication/240787100_Analysis_of_Genetic_Diversity_in_Crop_Plants-Salient_Statistical_Tools_and_Considerations

Mora-Aguilar, E. F., & Delgado, L. (2012). A new species of Cyclocephala Dejean (Coleoptera: Scarabaeidae: Dynastinae: Cyclocephalini) from the cloud forests of Southeastern Mexico and description of the female of Cyclocephala berti Delgado. The Coleopterists Bulletin, 66(2), 139-142. doi: https://doi.org/10.1649/072.066.0209

Newton, A., Gow, J., Robertson, A., Williams, L. A., Ramírez, M. N., González, E. M., & Ennos, R. (2008). Genetic variation in two rare endemic Mexican trees, Magnolia sharpii and Magnolia schiedeana. Silvae Genetica, 57(6), 348-356. Retrieved from https://www.thuenen.de/media/institute/fg/PDF/Silvae_Genetica/2008/Vol._57_Heft_6/57_6_348.pdf

Nora, S., Albaladejo, R. G., González-Martínez, S. C., Robledo-Arnuncio, J. J., & Aparicio, A. (2011). Movimiento de genes (polen y semillas) en poblaciones fragmentadas de plantas. Revista Ecosistemas, 20(2-3), 35-45. Retrieved from https://www.revistaecosistemas.net/index.php/ecosistemas/article/view/21/15

Palacios, E. (2006). Cuarenta y ocho especies de la flora de Chiapas incluidas en el PROY-NOM-059-ECOL-2000. Retrieved from http://www.conabio.gob.mx/institucion/proyectos/resultados/W008_Fichas%20de%20especies.pdf

Pla, L. (2006). Biodiversidad: Inferencia basada en el índice de Shannon y la riqueza. Interciencia, 31(8), 583-590. Retrieved from http://www.redalyc.org/articulo.oa?id=33911906

Pusadee, T., Jamjod, S., Chiang, Y. -C., Rerkasem, B., & Schaal, B. A. (2009). Genetic structure and isolation by distance in a landrace of Thai rice. Proceedings of the National Academy of Sciences, 106(33), 13880-13885. doi: https://doi.org/10.1073/pnas.0906720106

Sandoval, M. J. B., Ramírez, S. A. F., Sheseña, H. I. M., Sormani, C., Ruiz de la Merced, F., Jarvio, A. D., & Farid, M. E. (2007). Evaluación del estado de conservación de los ecosistemas forestales de la región denominada Uxpanapa. Veracruz, México: Dirección General de Desarrollo Forestal, Gobierno del Estado de Veracruz - Pronatura A. C.

Secretaría del Medio Ambiente y Recursos Naturales (SEMARNAT). (2010). Norma Oficial Mexicana NOM-059-SEMARNAT-2010. Protección ambiental- Especies nativas de México de flora y fauna silvestres-Categorías de riesgo y especificaciones para su inclusión, exclusión o cambio-Lista de especies en riesgo. Diario Oficial de la Nación (Segunda sección). Ciudad de México, México. Retrieved from http://www.profepa.gob.mx/innovaportal/file/435/1/NOM_059_SEMARNAT_2010.pdf

Slavov, G., Robson, P., Jensen, E., Hodgson, E., Farrar, K., Allison, G., …Donnison, I. (2013). Contrasting geographic patterns of genetic variation for molecular markers vs. phenotypic traits in the energy grass Miscanthus sinensis. GCB Bioenergy, 5, 562-571. doi: https://doi.org/10.1111/gcbb.12025

White, G. M., Boshier, D. H., & Powell, W. (1999). Genetic variation within a fragmented population of Swietenia humilis Zucc. Molecular Ecology, 8(11), 1899-1909. doi: https://doi.org/10.1046/j.1365-294x.1999.00790.x

Xiao, L. Q., Ge, X. J., Gong, X., Hao, G., & Zheng, S. X. (2004). ISSR variation in the endemic and endangered plant Cycas guizhouensis (Cycadaceae). Annals of Botany, 94(1),133-138. doi: 10.1093/aob/mch119

Yu, H. H., Yang, Z. L., Sun, B., & Liu, R. (2011). Genetic diversity and relationship of endangered plant Magnolia officinalis (Magnoliaceae) assessed with ISSR polymorphisms. Biochemical Systematics and Ecology, 39(2), 71-78. doi: https://doi.org/10.1016/j.bse.2010.12.003

Creative Commons License

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

Copyright (c) 2017 Revista Chapingo Serie Ciencias Forestales y del Ambiente